3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
8FZD|1|A|G|2238
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZD_080 not in the Motif Atlas
Homologous match to IL_5J7L_325
Geometric discrepancy: 0.1115
The information below is about IL_5J7L_325
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8FZD|1|A|U|2081
8FZD|1|A|A|2082
8FZD|1|A|G|2083
*
8FZD|1|A|U|2236
8FZD|1|A|G|2237
8FZD|1|A|G|2238
8FZD|1|A|G|2239

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain Z
50S ribosomal protein L28

Coloring options:


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