IL_8FZD_136

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZD_136 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1229

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8FZD|1|a|U|409
8FZD|1|a|G|410
8FZD|1|a|A|411
8FZD|1|a|A|412
8FZD|1|a|G|413
8FZD|1|a|A|414
8FZD|1|a|A|415
8FZD|1|a|G|416
*
8FZD|1|a|U|427
8FZD|1|a|G|428
8FZD|1|a|U|429
8FZD|1|a|A|430
8FZD|1|a|A|431
8FZD|1|a|A|432
8FZD|1|a|G|433

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4