3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
8FZD|1|A|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZD_182 not in the Motif Atlas
Geometric match to IL_5J7L_399
Geometric discrepancy: 0.1398
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

8FZD|1|A|A|844
8FZD|1|A|A|845
8FZD|1|A|U|846
8FZD|1|A|U|847
8FZD|1|A|C|848
*
8FZD|1|A|G|930
8FZD|1|A|U|931
8FZD|1|A|U|932
8FZD|1|A|A|933
8FZD|1|A|U|934

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L30

Coloring options:


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