IL_8FZD_185

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZD_185 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0884

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8FZD|1|A|G|1666
8FZD|1|A|G|1667
8FZD|1|A|A|1668
8FZD|1|A|A|1669
8FZD|1|A|C|1670
8FZD|1|A|U|1671
8FZD|1|A|A|1672
8FZD|1|A|G|1673
8FZD|1|A|G|1674
*
8FZD|1|A|C|1990
8FZD|1|A|U|1991
8FZD|1|A|G|1992
8FZD|1|A|U|1993
8FZD|1|A|C|1994

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14