IL_8FZE_009

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZE_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3844

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8FZE|1|A|C|274
8FZE|1|A|C|275
8FZE|1|A|U|276
8FZE|1|A|G|277
8FZE|1|A|A|278
8FZE|1|A|A|279
8FZE|1|A|U|280
8FZE|1|A|C|281
*
8FZE|1|A|G|359
8FZE|1|A|U|360
8FZE|1|A|G|361
8FZE|1|A|A|362
8FZE|1|A|G|363

Current chains

Chain A

23S Ribosomal RNA

Nearby chains