IL_8FZE_186

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZE_186 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0784

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8FZE|1|A|G|1666
8FZE|1|A|G|1667
8FZE|1|A|A|1668
8FZE|1|A|A|1669
8FZE|1|A|C|1670
8FZE|1|A|U|1671
8FZE|1|A|A|1672
8FZE|1|A|G|1673
8FZE|1|A|G|1674
*
8FZE|1|A|C|1990
8FZE|1|A|U|1991
8FZE|1|A|G|1992
8FZE|1|A|U|1993
8FZE|1|A|C|1994

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14