IL_8FZF_009

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4199

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8FZF|1|A|C|274
8FZF|1|A|C|275
8FZF|1|A|U|276
8FZF|1|A|G|277
8FZF|1|A|A|278
8FZF|1|A|A|279
8FZF|1|A|U|280
8FZF|1|A|C|281
*
8FZF|1|A|G|359
8FZF|1|A|U|360
8FZF|1|A|G|361
8FZF|1|A|A|362
8FZF|1|A|G|363

Current chains

Chain A

23S Ribosomal RNA

Nearby chains