3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGG*CUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_032 not in the Motif Atlas
Geometric match to IL_5J7L_011
Geometric discrepancy: 0.1941
The information below is about IL_5J7L_011
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

8FZF|1|A|G|881
8FZF|1|A|G|882
8FZF|1|A|G|883
*
8FZF|1|A|C|893
8FZF|1|A|U|894
8FZF|1|A|U|895

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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