IL_8FZF_070

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

8FZF|1|A|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_070 not in the Motif Atlas

Homologous match to IL_4WF9_068

Geometric discrepancy: 0.0998

The information below is about IL_4WF9_068

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8FZF|1|A|G|1770
8FZF|1|A|C|1771
*
8FZF|1|A|G|1980
8FZF|1|A|A|1981
8FZF|1|A|U|1982

Current chains

Chain A

23S Ribosomal RNA

Nearby chains