IL_8FZF_089

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUGUGUAGGAUAG*CCUUU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZF|1|A|G|2107
8FZF|1|A|A|2108
8FZF|1|A|U|2109
8FZF|1|A|G|2110
8FZF|1|A|U|2111
8FZF|1|A|G|2112
8FZF|1|A|U|2113
8FZF|1|A|A|2114
8FZF|1|A|G|2115
8FZF|1|A|G|2116
8FZF|1|A|A|2117
8FZF|1|A|U|2118
8FZF|1|A|A|2119
8FZF|1|A|G|2120
*
8FZF|1|A|C|2178
8FZF|1|A|C|2179
8FZF|1|A|U|2180
8FZF|1|A|U|2181
8FZF|1|A|U|2182

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA