IL_8FZF_097

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

8FZF|1|A|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_097 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.22

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8FZF|1|A|U|2401
8FZF|1|A|U|2402
8FZF|1|A|C|2403
*
8FZF|1|A|G|2414
8FZF|1|A|G|2415

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15