3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGG*CA(OMC)CU
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_098 not in the Motif Atlas
Homologous match to IL_5J7L_335
Geometric discrepancy: 0.1281
The information below is about IL_5J7L_335
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FZF|1|A|A|2453
8FZF|1|A|G|2454
8FZF|1|A|G|2455
*
8FZF|1|A|C|2496
8FZF|1|A|A|2497
8FZF|1|A|OMC|2498
8FZF|1|A|C|2499
8FZF|1|A|U|2500

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain O
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2029 s