3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
C(PSU)GA*UGG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_099 not in the Motif Atlas
Geometric match to IL_7RQB_093
Geometric discrepancy: 0.3149
The information below is about IL_7RQB_093
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_63450.2
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
8

Unit IDs

8FZF|1|A|C|2456
8FZF|1|A|PSU|2457
8FZF|1|A|G|2458
8FZF|1|A|A|2459
*
8FZF|1|A|U|2493
8FZF|1|A|G|2494
8FZF|1|A|G|2495

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L16

Coloring options:


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