IL_8FZF_143

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_143 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1433

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8FZF|1|a|U|409
8FZF|1|a|G|410
8FZF|1|a|A|411
8FZF|1|a|A|412
8FZF|1|a|G|413
8FZF|1|a|A|414
8FZF|1|a|A|415
8FZF|1|a|G|416
*
8FZF|1|a|U|427
8FZF|1|a|G|428
8FZF|1|a|U|429
8FZF|1|a|A|430
8FZF|1|a|A|431
8FZF|1|a|A|432
8FZF|1|a|G|433

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4