3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GU*AUAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_153 not in the Motif Atlas
Homologous match to IL_5J7L_029
Geometric discrepancy: 0.1568
The information below is about IL_5J7L_029
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
18

Unit IDs

8FZF|1|a|G|597
8FZF|1|a|U|598
*
8FZF|1|a|A|640
8FZF|1|a|U|641
8FZF|1|a|A|642
8FZF|1|a|C|643

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain q
Small ribosomal subunit protein uS17

Coloring options:


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