IL_8FZF_153

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_153 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.1568

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

8FZF|1|a|G|597
8FZF|1|a|U|598
*
8FZF|1|a|A|640
8FZF|1|a|U|641
8FZF|1|a|A|642
8FZF|1|a|C|643

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

Small ribosomal subunit protein uS17