IL_8FZF_155
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GA*UGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZF_155 not in the Motif Atlas
- Homologous match to IL_4LFB_027
- Geometric discrepancy: 0.0855
- The information below is about IL_4LFB_027
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_74641.1
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 32
Unit IDs
8FZF|1|a|G|654
8FZF|1|a|A|655
*
8FZF|1|a|U|751
8FZF|1|a|G|752
8FZF|1|a|A|753
8FZF|1|a|C|754
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain o
- Small ribosomal subunit protein uS15
Coloring options: