IL_8FZF_172

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_172 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1413

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8FZF|1|a|G|1050
8FZF|1|a|C|1051
8FZF|1|a|U|1052
*
8FZF|1|a|G|1206
8FZF|1|a|2MG|1207
8FZF|1|a|C|1208

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain n

Small ribosomal subunit protein uS14