3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
8FZF|1|A|U|846, 8FZF|1|A|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_192 not in the Motif Atlas
Homologous match to IL_5J7L_399
Geometric discrepancy: 0.1259
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

8FZF|1|A|A|844
8FZF|1|A|A|845
8FZF|1|A|U|846
8FZF|1|A|U|847
8FZF|1|A|C|848
*
8FZF|1|A|G|930
8FZF|1|A|U|931
8FZF|1|A|U|932
8FZF|1|A|A|933
8FZF|1|A|U|934

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 2
Large ribosomal subunit protein uL30

Coloring options:


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