IL_8FZF_208

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGCC*GGAACUC

Length

13 nucleotides

Bulged bases

8FZF|1|a|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZF|1|a|G|1124
8FZF|1|a|U|1125
8FZF|1|a|U|1126
8FZF|1|a|G|1127
8FZF|1|a|C|1128
8FZF|1|a|C|1129
*
8FZF|1|a|G|1143
8FZF|1|a|G|1144
8FZF|1|a|A|1145
8FZF|1|a|A|1146
8FZF|1|a|C|1147
8FZF|1|a|U|1148
8FZF|1|a|C|1149

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain j

30S ribosomal protein S10