3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
(5MC)AC*GAAG
Length
7 nucleotides
Bulged bases
8FZF|1|a|A|1492, 8FZF|1|a|A|1493
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_210 not in the Motif Atlas
Homologous match to IL_4LFB_070
Geometric discrepancy: 0.5792
The information below is about IL_4LFB_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31531.3
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
13

Unit IDs

8FZF|1|a|5MC|1407
8FZF|1|a|A|1408
8FZF|1|a|C|1409
*
8FZF|1|a|G|1491
8FZF|1|a|A|1492
8FZF|1|a|A|1493
8FZF|1|a|G|1494

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain l
30S ribosomal protein S12
Chain z
F-UAA mRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1401 s