IL_8FZG_009

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3902

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8FZG|1|A|C|274
8FZG|1|A|C|275
8FZG|1|A|U|276
8FZG|1|A|G|277
8FZG|1|A|A|278
8FZG|1|A|A|279
8FZG|1|A|U|280
8FZG|1|A|C|281
*
8FZG|1|A|G|359
8FZG|1|A|U|360
8FZG|1|A|G|361
8FZG|1|A|A|362
8FZG|1|A|G|363

Current chains

Chain A

23S Ribosomal RNA

Nearby chains