3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZG_009 not in the Motif Atlas
Homologous match to IL_5J7L_253
Geometric discrepancy: 0.3902
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

8FZG|1|A|C|274
8FZG|1|A|C|275
8FZG|1|A|U|276
8FZG|1|A|G|277
8FZG|1|A|A|278
8FZG|1|A|A|279
8FZG|1|A|U|280
8FZG|1|A|C|281
*
8FZG|1|A|G|359
8FZG|1|A|U|360
8FZG|1|A|G|361
8FZG|1|A|A|362
8FZG|1|A|G|363

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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