IL_8FZG_027

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_027 not in the Motif Atlas

Geometric match to IL_3K0J_002

Geometric discrepancy: 0.3856

The information below is about IL_3K0J_002

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8FZG|1|A|G|862
8FZG|1|A|A|863
*
8FZG|1|A|U|913
8FZG|1|A|G|914
8FZG|1|A|C|915

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain O

50S ribosomal protein L16