IL_8FZG_188

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

8FZG|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_188 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2164

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

8FZG|1|A|G|880
8FZG|1|A|G|881
8FZG|1|A|G|882
*
8FZG|1|A|U|894
8FZG|1|A|U|895
8FZG|1|A|A|896
8FZG|1|A|C|897

Current chains

Chain A

23S Ribosomal RNA

Nearby chains