IL_8FZH_091

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

8FZH|1|A|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZH_091 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.2499

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8FZH|1|A|U|2401
8FZH|1|A|U|2402
8FZH|1|A|C|2403
*
8FZH|1|A|G|2414
8FZH|1|A|G|2415

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15