IL_8FZH_139

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8FZH|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZH_139 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.081

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8FZH|1|a|G|446
8FZH|1|a|G|447
8FZH|1|a|A|448
8FZH|1|a|G|449
8FZH|1|a|G|450
*
8FZH|1|a|C|483
8FZH|1|a|G|484
8FZH|1|a|U|485
8FZH|1|a|U|486
8FZH|1|a|A|487
8FZH|1|a|C|488

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16