IL_8FZI_006

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZI_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0833

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8FZI|1|A|G|188
8FZI|1|A|G|189
8FZI|1|A|A|190
8FZI|1|A|A|191
8FZI|1|A|C|192
8FZI|1|A|U|193
8FZI|1|A|G|194
*
8FZI|1|A|C|201
8FZI|1|A|U|202
8FZI|1|A|A|203
8FZI|1|A|A|204
8FZI|1|A|G|205
8FZI|1|A|U|206
8FZI|1|A|A|207
8FZI|1|A|C|208

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28