IL_8FZI_095

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

8FZI|1|A|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZI_095 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.2152

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8FZI|1|A|U|2401
8FZI|1|A|U|2402
8FZI|1|A|C|2403
*
8FZI|1|A|G|2414
8FZI|1|A|G|2415

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15