IL_8FZJ_012
3D structure
- PDB id
- 8FZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8FZJ|1|A|A|504, 8FZJ|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZJ_012 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.091
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
8FZJ|1|A|G|481
8FZJ|1|A|A|482
8FZJ|1|A|A|483
8FZJ|1|A|C|484
*
8FZJ|1|A|G|496
8FZJ|1|A|A|497
8FZJ|1|A|G|498
8FZJ|1|A|U|499
8FZJ|1|A|G|500
8FZJ|1|A|A|501
8FZJ|1|A|A|502
8FZJ|1|A|A|503
8FZJ|1|A|A|504
8FZJ|1|A|A|505
8FZJ|1|A|G|506
8FZJ|1|A|A|507
8FZJ|1|A|A|508
8FZJ|1|A|C|509
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L22
- Chain W
- 50S ribosomal protein L24
Coloring options: