IL_8FZJ_071

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZJ_071 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.2571

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8FZJ|1|A|G|1846
8FZJ|1|A|A|1847
8FZJ|1|A|A|1848
8FZJ|1|A|G|1849
*
8FZJ|1|A|C|1893
8FZJ|1|A|C|1894

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Transfer RNA; tRNA