IL_8FZJ_191

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZJ_191 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0771

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8FZJ|1|A|G|1666
8FZJ|1|A|G|1667
8FZJ|1|A|A|1668
8FZJ|1|A|A|1669
8FZJ|1|A|C|1670
8FZJ|1|A|U|1671
8FZJ|1|A|A|1672
8FZJ|1|A|G|1673
8FZJ|1|A|G|1674
*
8FZJ|1|A|C|1990
8FZJ|1|A|U|1991
8FZJ|1|A|G|1992
8FZJ|1|A|U|1993
8FZJ|1|A|C|1994

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14