IL_8FZJ_205
3D structure
- PDB id
- 8FZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAGUU*AAUGUGCCUUCGGGAAC
- Length
- 23 nucleotides
- Bulged bases
- 8FZJ|1|a|U|1030, 8FZJ|1|a|C|1031, 8FZJ|1|a|G|1032
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZJ_205 not in the Motif Atlas
- Homologous match to IL_5J7L_045
- Geometric discrepancy: 0.5995
- The information below is about IL_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13394.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
8FZJ|1|a|G|1003
8FZJ|1|a|A|1004
8FZJ|1|a|A|1005
8FZJ|1|a|G|1006
8FZJ|1|a|U|1007
8FZJ|1|a|U|1008
*
8FZJ|1|a|A|1021
8FZJ|1|a|A|1022
8FZJ|1|a|U|1023
8FZJ|1|a|G|1024
8FZJ|1|a|U|1025
8FZJ|1|a|G|1026
8FZJ|1|a|C|1027
8FZJ|1|a|C|1028
8FZJ|1|a|U|1029
8FZJ|1|a|U|1030
8FZJ|1|a|C|1031
8FZJ|1|a|G|1032
8FZJ|1|a|G|1033
8FZJ|1|a|G|1034
8FZJ|1|a|A|1035
8FZJ|1|a|A|1036
8FZJ|1|a|C|1037
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain n
- 30S ribosomal protein S14
Coloring options: