IL_8G2A_007
3D structure
- PDB id
- 8G2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G2A_007 not in the Motif Atlas
- Homologous match to IL_7RQB_007
- Geometric discrepancy: 0.0361
- The information below is about IL_7RQB_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8G2A|1|1A|U|239
8G2A|1|1A|G|240
8G2A|1|1A|A|241
8G2A|1|1A|G|242
8G2A|1|1A|U|243
8G2A|1|1A|A|244
8G2A|1|1A|G|245
*
8G2A|1|1A|C|253
8G2A|1|1A|G|254
8G2A|1|1A|A|255
8G2A|1|1A|A|256
8G2A|1|1A|A|257
8G2A|1|1A|G|258
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
Coloring options: