IL_8G2A_016

3D structure

PDB id

8G2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGG,CCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2A_016 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1742

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8G2A|1|1A|C|652|||D
8G2A|1|1A|G|652|||E
8G2A|1|1A|G|652|||F
*
8G2A|1|1A|C|652|||S
8G2A|1|1A|C|652|||T
8G2A|1|1A|G|652|||U

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30