IL_8G2B_045

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

8G2B|1|1A|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_045 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.0495

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G2B|1|1A|C|1202
8G2B|1|1A|G|1203
8G2B|1|1A|A|1204
8G2B|1|1A|U|1205
8G2B|1|1A|G|1206
*
8G2B|1|1A|U|1240
8G2B|1|1A|A|1241
8G2B|1|1A|A|1242
8G2B|1|1A|G|1243

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15