IL_8G2B_213

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

8G2B|1|2A|U|1142, 8G2B|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_213 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0949

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8G2B|1|2A|C|1018
8G2B|1|2A|U|1019
8G2B|1|2A|A|1020
8G2B|1|2A|A|1021
8G2B|1|2A|G|1022
8G2B|1|2A|U|1023
8G2B|1|2A|G|1024
*
8G2B|1|2A|C|1140
8G2B|1|2A|U|1141
8G2B|1|2A|U|1142
8G2B|1|2A|A|1142|||A
8G2B|1|2A|A|1143
8G2B|1|2A|G|1144

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2N

50S ribosomal protein L13