IL_8G2B_306

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

8G2B|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_306 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0969

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8G2B|1|2a|G|409
8G2B|1|2a|G|410
8G2B|1|2a|A|411
8G2B|1|2a|A|412
8G2B|1|2a|G|413
8G2B|1|2a|A|414
8G2B|1|2a|A|415
8G2B|1|2a|G|416
*
8G2B|1|2a|U|427
8G2B|1|2a|G|428
8G2B|1|2a|U|429
8G2B|1|2a|A|430
8G2B|1|2a|A|431
8G2B|1|2a|A|432
8G2B|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4