IL_8G2B_355

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACAACCC*GGGCUAAUC

Length

17 nucleotides

Bulged bases

8G2B|1|1a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2B|1|1a|G|148
8G2B|1|1a|A|149
8G2B|1|1a|C|150
8G2B|1|1a|A|151
8G2B|1|1a|A|152
8G2B|1|1a|C|153
8G2B|1|1a|C|154
8G2B|1|1a|C|155
*
8G2B|1|1a|G|166
8G2B|1|1a|G|167
8G2B|1|1a|G|168
8G2B|1|1a|C|169
8G2B|1|1a|U|170
8G2B|1|1a|A|171
8G2B|1|1a|A|172
8G2B|1|1a|U|173
8G2B|1|1a|C|174

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20