3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G2D_014 not in the Motif Atlas
Geometric match to IL_7RQB_083
Geometric discrepancy: 0.2928
The information below is about IL_7RQB_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
270

Unit IDs

8G2D|1|1A|C|378
8G2D|1|1A|G|379
8G2D|1|1A|U|380
*
8G2D|1|1A|A|394
8G2D|1|1A|U|395
8G2D|1|1A|G|396

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L28

Coloring options:


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