IL_8G2D_234

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2D_234 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1211

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8G2D|1|2A|A|1469
8G2D|1|2A|G|1470
8G2D|1|2A|A|1471
8G2D|1|2A|A|1472
8G2D|1|2A|G|1473
*
8G2D|1|2A|U|1518
8G2D|1|2A|G|1519
8G2D|1|2A|G|1520
8G2D|1|2A|U|1523

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains