IL_8G2D_309

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

8G2D|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2D_309 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1206

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8G2D|1|2a|G|409
8G2D|1|2a|G|410
8G2D|1|2a|A|411
8G2D|1|2a|A|412
8G2D|1|2a|G|413
8G2D|1|2a|A|414
8G2D|1|2a|A|415
8G2D|1|2a|G|416
*
8G2D|1|2a|U|427
8G2D|1|2a|G|428
8G2D|1|2a|U|429
8G2D|1|2a|A|430
8G2D|1|2a|A|431
8G2D|1|2a|A|432
8G2D|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4