3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCU*G(2MG)C
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G2D_333 not in the Motif Atlas
Geometric match to IL_6IA2_001
Geometric discrepancy: 0.1696
The information below is about IL_6IA2_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8G2D|1|2a|G|1050
8G2D|1|2a|C|1051
8G2D|1|2a|U|1052
*
8G2D|1|2a|G|1206
8G2D|1|2a|2MG|1207
8G2D|1|2a|C|1208

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2c
30S ribosomal protein S3
Chain 2n
30S ribosomal protein S14 type Z
Chain 2w
Transfer RNA; tRNA

Coloring options:


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