IL_8G2D_373

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2D_373 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0657

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8G2D|1|2A|G|1666
8G2D|1|2A|G|1667
8G2D|1|2A|A|1668
8G2D|1|2A|A|1669
8G2D|1|2A|C|1670
8G2D|1|2A|U|1671
8G2D|1|2A|C|1672
8G2D|1|2A|U|1673
8G2D|1|2A|G|1674
*
8G2D|1|2A|C|1990
8G2D|1|2A|U|1991
8G2D|1|2A|G|1992
8G2D|1|2A|U|1993
8G2D|1|2A|C|1994

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14