IL_8G2D_381
3D structure
- PDB id
- 8G2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGUGAAC*GGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8G2D|1|1A|U|2132, 8G2D|1|1A|A|2135
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G2D_381 not in the Motif Atlas
- Homologous match to IL_5J7L_330
- Geometric discrepancy: 0.5308
- The information below is about IL_5J7L_330
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
8G2D|1|1A|C|2129
8G2D|1|1A|U|2130
8G2D|1|1A|G|2131
8G2D|1|1A|U|2132
8G2D|1|1A|G|2133
8G2D|1|1A|A|2134
8G2D|1|1A|A|2135
8G2D|1|1A|C|2136
*
8G2D|1|1A|G|2155
8G2D|1|1A|G|2156
8G2D|1|1A|G|2157
8G2D|1|1A|A|2158
8G2D|1|1A|G|2159
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: