IL_8G34_041

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8G34|1|B|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_041 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1256

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

8G34|1|B|U|1018
8G34|1|B|U|1019
8G34|1|B|A|1020
8G34|1|B|A|1021
8G34|1|B|G|1022
8G34|1|B|U|1023
8G34|1|B|G|1024
*
8G34|1|B|C|1140
8G34|1|B|U|1141
8G34|1|B|A|1142
8G34|1|B|A|1143
8G34|1|B|A|1144

Current chains

Chain B

23S

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13