IL_8G34_071

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8G34|1|B|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_071 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1084

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G34|1|B|U|1712
8G34|1|B|A|1713
8G34|1|B|U|1714
8G34|1|B|G|1715
8G34|1|B|U|1716
8G34|1|B|A|1717
8G34|1|B|G|1718
*
8G34|1|B|U|1742
8G34|1|B|G|1743
8G34|1|B|A|1744
8G34|1|B|A|1745
8G34|1|B|A|1746

Current chains

Chain B

23S

Nearby chains

Chain v

Small subunit ribosomal RNA; SSU rRNA