IL_8G34_100

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_100 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1289

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8G34|1|B|C|2466
8G34|1|B|C|2467
8G34|1|B|A|2468
8G34|1|B|A|2469
8G34|1|B|G|2470
*
8G34|1|B|C|2480
8G34|1|B|G|2481
8G34|1|B|A|2482
8G34|1|B|C|2483
8G34|1|B|G|2484

Current chains

Chain B

23S

Nearby chains

Chain 4

50S ribosomal protein L36

Chain 6

GTPase HflX

Chain M

50S ribosomal protein L16