IL_8G34_138

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_138 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8G34|1|v|U|409
8G34|1|v|G|410
8G34|1|v|A|411
8G34|1|v|A|412
8G34|1|v|G|413
8G34|1|v|A|414
8G34|1|v|A|415
8G34|1|v|G|416
*
8G34|1|v|U|427
8G34|1|v|G|428
8G34|1|v|U|429
8G34|1|v|A|430
8G34|1|v|A|431
8G34|1|v|A|432
8G34|1|v|G|433

Current chains

Chain v

16S

Nearby chains

Chain c

30S ribosomal protein S4