IL_8G34_140

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8G34|1|v|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_140 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.0794

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G34|1|v|G|446
8G34|1|v|G|447
8G34|1|v|A|448
8G34|1|v|G|449
8G34|1|v|G|450
*
8G34|1|v|C|483
8G34|1|v|G|484
8G34|1|v|U|485
8G34|1|v|U|486
8G34|1|v|A|487
8G34|1|v|C|488

Current chains

Chain v

16S

Nearby chains

Chain c

30S ribosomal protein S4

Chain o

30S ribosomal protein S16