IL_8G38_007

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_007 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.1175

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G38|1|B|G|24
8G38|1|B|U|25
8G38|1|B|G|26
8G38|1|B|G|27
8G38|1|B|A|28
8G38|1|B|U|29
8G38|1|B|G|30
*
8G38|1|B|C|510
8G38|1|B|U|511
8G38|1|B|G|512
8G38|1|B|A|513
8G38|1|B|A|514
8G38|1|B|A|515
8G38|1|B|C|516

Current chains

Chain B

23S

Nearby chains

Chain 0

50S ribosomal protein L32

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22