IL_8G38_015

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_015 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.581

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8G38|1|B|C|274
8G38|1|B|C|275
8G38|1|B|U|276
8G38|1|B|G|277
8G38|1|B|A|278
8G38|1|B|A|279
8G38|1|B|U|280
8G38|1|B|C|281
*
8G38|1|B|G|359
8G38|1|B|U|360
8G38|1|B|G|361
8G38|1|B|A|362
8G38|1|B|G|363

Current chains

Chain B

23S

Nearby chains